Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs115591316 chr7:157942186 A/C 0 481 31.27 30.8 12.87 KM Plot
PRAD rs11570067 chr11:47366095 G/T 2.2E-6 476 30.8 31.4 20.93 KM Plot
PRAD rs11571313 chr2:204821605 C/T 3.01E-5 492 30.8 31.87 20.33 KM Plot
PRAD rs11583890 chr1:6693876 A/G 0.000166 473 29.97 31.27 30.73 KM Plot
PRAD rs115865323 chr5:154135802 C/T 0 490 30.08 33.47 4.87 KM Plot
PRAD rs11595321 chr10:99402681 C/T 3.59E-6 482 31.27 29.12 24.67 KM Plot
PRAD rs115956035 chr4:187812329 G/A 2.09E-6 482 31.07 28.93 26.8 KM Plot
PRAD rs11602024 chr11:36310244 G/C 8.73E-5 484 31.07 32.47 26.37 KM Plot
PRAD rs11602270 chr11:93584622 G/A 3.64E-5 477 32.32 28.22 29.63 KM Plot
PRAD rs11602366 chr11:72456501 G/A 7.48E-5 479 30.53 33.47 22.37 KM Plot
PRAD rs116030684 chr11:129943288 T/A 1.17E-5 492 30.87 33.13 22.67 KM Plot
PRAD rs116081712 chr20:61662588 A/G 8.11E-6 484 31.07 30.27 24.15 KM Plot
PRAD rs116081973 chr5:154131460 T/A 0 490 30.08 33.47 4.87 KM Plot
PRAD rs11609955 chr12:771677 C/G 0.000133 494 30.27 32.63 29.17 KM Plot
PRAD rs116107867 chr5:154132098 C/T 0 490 30.08 33.47 4.87 KM Plot